Accepted Papers

Keynote Paper


Erich Gombocz.
Changing the Model in Pharma and Healthcare – Can we afford to wait any longer?
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Long and Short Research Papers


Anika Groß, Julio Cesar Dos Reis, Michael Hartung, Cédric Pruski and Erhard Rahm.

Semi-Automatic Adaptation of Mappings between Life Science Ontologies
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Marc Hulsman, Jan Bot, Arjen de Vries and Marcel Reinders.
Ibidas: Querying flexible data structures to explore heterogeneous bioinformatics data
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Michael Hartung, Lars Kolb, Anika Groß and Erhard Rahm.
Optimizing Similarity Computations for Ontology Matching - Experiences from GOMMA
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Gregory Butler.
Putting It All Together: The Design of a Pipeline for Genome-Wide Functional Annotation of Fungi in the Modern Era of Omics Data and Systems Biology
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David Booth.
The RDF Pipeline Framework: Automating Distributed, Dependency-Driven Data Pipelines
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Amir H. Asiaee, Prashant Doshi, Todd Minning, Satya Sahoo, Priti Parikh, Amit Sheth and Rick L. Tarleton.
From Questions to Effective Answers: On the Utility of Knowledge-Driven Querying Systems for Life Sciences Data
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Thomas Stoltmann, Karin Zimmermann, André Koschmieder and Ulf Leser.

OmixAnalyzer - A Web-Based System for Management and Analysis of High-Throughput Omics Data Sets
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Syed Ahmad Chan Bukhari, Artjom Klein and Christopher J.O. Baker.
Towards interoperable BioNLP Semantic Web Services using the SADI Framework
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James McCusker, Timothy Lebo, Michael Krauthammer and Deborah McGuinness.
Next Generation Cancer Data Discovery, Access, and Integration Using Prizms and Nanopublications
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Jyotishman Pathak, Richard Kiefer and Christopher Chute.
Mining Anti-Coagulant Drug-Drug Interactions from Electronic Health Records using Linked Data
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Early Career Track Papers (Download ZIP)


Leonid L. Chepelev and Michel Dumontier.
Integrative Metabolic Fate Prediction and Retrosynthetic Analysis the Semantic Way
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Dagmar Waltemath, Olaf Wolkenhauer, Nicolas Le Novère and Michel Dumontier.
Possibilities for Integrating Model-related Data in Computational Biology
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System Papers (Download ZIP)


Vahe Chahinian, Marie-Jean Meurs, David Mason, Erin McDonnell, Ingo Morgenstern, Gregory Butler and Adrian Tsang.
Proxiris, an augmented browsing tool for literature curation
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James Snowden, Martijn van Iersel and Nadia Anwar.
Enhancing therapeutic target knowledge through ontological integration of biological data.
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Phillipe Loher, Nikos Vasilakis, John Malamon, Huang-Wen Chen and Isidore Rigoutsos.
HandsFree - Next Generation Sequence Processing, Mapping and Analysis Made Easy
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Dennis Medved, Johan Nilsson and Pierre Nugues.
Streamlining a Transplantation Survival Prediction Program with a RDF Triplestore
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Ahmad C. Bukhari and Christopher Baker.
The Canadian health census as Linked Open Data: towards policy making in public health
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Jose Cruz-Toledo, Alison Callahan and Michel Dumontier.
Bio2RDF: Linked Data for the Life Sciences
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